miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|92219959|gb|EB490058.1|EB490058 CAAGTTTCGGTCCGGAATTTCCCGGGATATTTAATAACATTACCCAAGTCAATGGTGCGTTTAGTGAATCTCCAAAGATT
GGATATAGGAGGCAATGAGTTTACAGAGCTGCCCGAAGTTGTGGGAGAGCTAAAGTCGTTGAAGGAACTGTGGATAGACT
TCAATCAGATACGACGTGTATCGGCAAACATTGGCAAATTGCGGGAACTGCAACATTTTGAAGCAAATGGCAATCTATTG
GACTCACTGCCCAATGAACTGAGCCAGTGGCGCAATGTGGAGGTACTTTCCATATGTTCAAACAATTTGGAGGCATTTCC
CTTTAGTGTGGGCATGCTAAAGTCGCTGGTCACTTTCAAGTGTGAATCGAATGGTTTGAGTGAGTTACCCGACAGCATAA
GCTATCTGGAGCAATTGGAGGAACTGGTGCTGAGTCATAATAAGCTAATGCGTCTGCCCAGCACCATTGGGATGCTGAAA
CGTTTGAGGTTTCTCTTCGCGGACGATAATCAACTGCGTCAATTGCCCGATGAGCTGTGCAGTTGCCAGCAGCTGAGTGT
ACTGAGTGTGGCAAATAATCAGTTGTCGGCATTGCCGCAGAATATTGGAAATCTGGGAAAGCTGCGTGTCCTTAATGTTG
TTAATAATTATATAAATGCCTTGCCCGTGTCCATGCTTAGCCTGGTGCAACTTACCTCACTCTGGTTAAGCGATAATCAG
AGTCAACCATTGGTGCCCTTGCAATATTTAGATGCTTCAACCAAAACCCAATTGACGTGCTTTATGCTGCCGCAAGTGAC
ATTCAAAATGAATAGTATACAAGCCCAACAGCAGGCCCAAGAGCAATATGAATTCGTCTATGCCAATCAACAGCAGCCGC
ACATGTG




Most similar to sp|Q9V780|LAP1_DROME

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9V780|LAP1_DROME Protein lap1 OS=Drosophila melanogaster GN=Lap1
            PE=1 SV=1
          Length = 849

 Score =  513 bits (1321), Expect = e-145
 Identities = 257/284 (90%), Positives = 271/284 (95%)
 Frame = +1

Query: 31   LITLPKSMVRLVNLQRLDIGGNEFTELPEVVGELKSLKELWIDFNQIRRVSANIGKLREL 210
            L+TLPKSMVRL+NLQRLDIGGNEFTELPEVVGELKSL+ELWIDFNQIRRVSANIGKLR+L
Sbjct: 167  LMTLPKSMVRLINLQRLDIGGNEFTELPEVVGELKSLRELWIDFNQIRRVSANIGKLRDL 226

Query: 211  QHFEANGNLLDSLPNELSQWRNVEVLSICSNNLEAFPFSVGMLKSLVTFKCESNGLSELP 390
            QHFEANGNLLD+LP+ELS WRNVEVLSICSN+LEAFPFSVGMLKSLVTFKCESNGL+ELP
Sbjct: 227  QHFEANGNLLDTLPSELSNWRNVEVLSICSNSLEAFPFSVGMLKSLVTFKCESNGLTELP 286

Query: 391  DSISYLEQLEELVLSHNKLMRLPSTIGMLKRLRFLFADDNQLRQLPDELCSCQQLSVLSV 570
            DSISYLEQLEELVLSHNKL+RLPSTIGML+ LRFLFADDNQLRQLPDELCSCQQLSVLSV
Sbjct: 287  DSISYLEQLEELVLSHNKLIRLPSTIGMLRSLRFLFADDNQLRQLPDELCSCQQLSVLSV 346

Query: 571  ANNQLSALPQNIGNLGKLRVLNVVNNYINALPVSMLSLVQLTSLWLSDNQSQPLVPLQYL 750
            ANNQLSALPQNIGNL K++VLNVVNNYINALPVSML+LV LTS+WLSDNQSQPLVPLQYL
Sbjct: 347  ANNQLSALPQNIGNLSKMKVLNVVNNYINALPVSMLNLVNLTSMWLSDNQSQPLVPLQYL 406

Query: 751  DASTKTQLTCFMLPQVTFKMNSIXXXXXXXXXYEFVYANQQQPH 882
            DASTKTQLTCFMLPQVTFKMNSI         YEFVYANQQQPH
Sbjct: 407  DASTKTQLTCFMLPQVTFKMNSIQAQQQAQEQYEFVYANQQQPH 450



 Score =  114 bits (286), Expect = 7e-25
 Identities = 74/230 (32%), Positives = 116/230 (50%)
 Frame = +1

Query: 31  LITLPKSMVRLVNLQRLDIGGNEFTELPEVVGELKSLKELWIDFNQIRRVSANIGKLREL 210
           L ++P+++  L  LQ LD+  N    +PE +   K L  L +  N ++R+   I  L  L
Sbjct: 75  LESIPQAIGSLRQLQHLDLNRNLIVNVPEEIKSCKHLTHLDLSCNSLQRLPDAITSLISL 134

Query: 211 QHFEANGNLLDSLPNELSQWRNVEVLSICSNNLEAFPFSVGMLKSLVTFKCESNGLSELP 390
           Q    N   L+ LP    +  N+ +L +  NNL   P S+  L +L       N  +ELP
Sbjct: 135 QELLLNETYLEFLPANFGRLVNLRILELRLNNLMTLPKSMVRLINLQRLDIGGNEFTELP 194

Query: 391 DSISYLEQLEELVLSHNKLMRLPSTIGMLKRLRFLFADDNQLRQLPDELCSCQQLSVLSV 570
           + +  L+ L EL +  N++ R+ + IG L+ L+   A+ N L  LP EL + + + VLS+
Sbjct: 195 EVVGELKSLRELWIDFNQIRRVSANIGKLRDLQHFEANGNLLDTLPSELSNWRNVEVLSI 254

Query: 571 ANNQLSALPQNIGNLGKLRVLNVVNNYINALPVSMLSLVQLTSLWLSDNQ 720
            +N L A P ++G L  L      +N +  LP S+  L QL  L LS N+
Sbjct: 255 CSNSLEAFPFSVGMLKSLVTFKCESNGLTELPDSISYLEQLEELVLSHNK 304